There are several other possible outcomes if Lee breaks for third on contact when France breaks for home.
The two most likely:
If the ground ball is to third, as in this case, and the third baseman throws home, we end up with 1st and 3rd, one out. Still can score a run without a hit.
If the 3rd baseman elects the easy out and simply waits to tag Lee, we score a run.
If you're gonna run the contact play in that situation, both runners need to run.
I don't know who effed up in this case, whether the contact play was on. I suspect it was, with Clemens and Vazquez due up.
I do know that baserunning is a pretty consistent team weskness.