It should help the team score more runs, not change how any single guy hits. Basically, put the best hitters at the top of the lineup. Don't give worse hitters more at bats than good hitters because they're fast or they can "handle the bat well". However, Molitor's "bunt early to get a lead" strategy does conflict with the SABR-constructed lineup idea. It'll mean either you're having one of your best hitters bunting in the first inning, or you've gone with the "handles the bat well" guy batting second.